PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803754.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 713aa    MW: 78562.6 Da    PI: 5.5474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.55e-1343477121374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla    + +++++a +p +  + ns e l++++++++++P++k
  XP_009803754.1 347 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAAtlaTKPSTSSAPKPFNPFPPNSLEILKIYQILYQACPYVK 441
                     68***************************************************98443456677777666666778******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++le
  XP_009803754.1 442 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLE 531
                     *********************************************************....9**************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl++++++ + gEalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r
  XP_009803754.1 532 DLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQR 620
                     **************************9......444557******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  XP_009803754.1 621 AKLEQYIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 712
                     *******************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.613321692IPR005202Transcription factor GRAS
PfamPF035141.7E-131347712IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLPLDESSLA SSESKKVTPV  60
TSDFELNCGS LAPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNH  120
PSPQPASSFS TTTHSNNNNN NNNYNIYAHH QGIHGQSMMM CSPPRSPLGP NYHSSNKGKG  180
LSPLQKVFNS PNNQFMQIES FKLPALESFL DDDYDKEEDL ASSYLALKVS GSGVAGSSSE  240
SFDALSVVPD LLECLALPNS SSNGPGSFMG SLLGDTSAVP DDEIFQTGSI APLSQQLQQE  300
RQHEKQQKQR PITHAQPPMT QQQHTQIINH NLVVAAPDQE QDSGLQLVHL LLACAEAVSK  360
EDYMLARRYL HHLNRVVTPI GDSMQRVASC FTEALTARLA ATLATKPSTS SAPKPFNPFP  420
PNSLEILKIY QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA  480
LAARPGGAPF LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR  540
RIGEALAVNS VNRLHRVPVN CIGNLLAMIR DQAPNIVTIV EQEASHNGPY FLGRFLEALH  600
YYSAIFDSLD ATFPADSSQR AKLEQYIFAP EIMNIVSCEG AERVVRHERL EKWRRLMEGK  660
GFKGVPLSAN AVTQSKILLG LYSCDGYKLT EDNGCLLLGW QDRAILAASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-603477124375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803754.10.0PREDICTED: DELLA protein RGL2-like
RefseqXP_016497576.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLA0A0M4FMK20.0A0A0M4FMK2_9SOLA; Transcription factor
STRINGSolyc02g094340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-97RGA-like 1